There a number of instances that I've run across with Motec ECU's that have warranted modifying the sensor output voltage so as to not overwhelm the ECU input. It was so common an issue that Motec added an oscilloscope to the MX00 series ECU's and created a few webinars to explain how to make things work for their products. Check out the webinars on ref/sync that they have on the website to better understand the issue. It is very very common to hear about the older Busa engines acting like they had a *hard* rev limiter around about 7000 rpm with the OE trigger wheel/sensor once you added a Motec. The solution was the modify the voltage inputs to an acceptable level and to filter things. It wouldn't surprise me if this same sort of thing was happening on an ECU that perhaps wasn't designed to go to relatively high RPM's like on a bike engine. Probably worth having a talk with Bosch about it.
-Kirk